PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_13630

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 133aa MW: 14213.1 Da PI: 10.2706

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_13630	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + L H r+H PEQU_13630 50 HQCLICWKTFATGQALGGHKRRH 72 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-7	8	25	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.99E-5	46	74	No hit	No description
PROSITE profile	PS50157	8.767	50	72	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-8	50	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
YSKDLIRKSF ASYQALGGHM TSHRKPIGDN RVFSGSQPAA SSSSDGAKGH QCLICWKTFA 60 TGQALGGHKR RHFDGTIGSA VGKGSAATSG VFRGFDLNLP PVMELGRQCW GLEDEEAVQS 120 PNPVKRPRLS IIA

Functional Description ? help Back to Top
Source	Description
UniProt	Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269\|PubMed:8223628}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020579179.1	8e-89	zinc finger protein AZF3-like
Swissprot	Q42430	2e-26	ZFP1_WHEAT; Zinc finger protein 1
TrEMBL	A0A2I0X1P6	2e-40	A0A2I0X1P6_9ASPA; Zinc finger protein ZAT10
STRING	XP_008792675.1	9e-28	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1022	36	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	8e-26	salt tolerance zinc finger