PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_13632

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 114aa MW: 12265.8 Da PI: 10.0619

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_13632	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + L H r+H PEQU_13632 31 HQCLICWKTFATGQALGGHKRRH 53 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-5	27	55	No hit	No description
PROSITE profile	PS50157	8.767	31	53	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.1E-8	31	53	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MTSHRKPIGD NRLFSGSQPA ASSSSDGAKG HQCLICWKTF ATGQALGGHK RRHFDGTIGS 60 AVGKGSAAAS GRFRGFDLNL PPVMDLERQC WGLEDEDKEQ SPNSVKRPRL LITA

Functional Description ? help Back to Top
Source	Description
UniProt	Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269\|PubMed:8223628}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020579173.1	9e-80	zinc finger protein AZF3-like
Swissprot	Q42430	2e-18	ZFP1_WHEAT; Zinc finger protein 1
TrEMBL	A0A2I0X1P6	1e-29	A0A2I0X1P6_9ASPA; Zinc finger protein ZAT10
STRING	MLOC_54674.1	2e-22	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1022	36	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	1e-15	zinc-finger protein 3