PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13674
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 138aa    MW: 15289.6 Da    PI: 7.1876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13674genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.1e-07649755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + r+RR+ri ++++eL +l+P        +++ a +L  A +Y+k Lq
  PEQU_13674  6 VAARQRRKRISEKMQELGRLIPGG-----MRMNSAPMLLAAFKYVKFLQ 49
                677*******************96.....59***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.719148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-7251No hitNo description
Gene3DG3DSA:4.10.280.104.2E-11363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-7554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-5749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSAQSVAARQ RRKRISEKMQ ELGRLIPGGM RMNSAPMLLA AFKYVKFLQA QYECKSAKNG  60
DLHVLLASPT IQQRLSAEGM CVVPKDLVDG LATGIEFQSE PLISSSTDSF NSEPFISDSM  120
DSFLQSFLKE DSKCFTDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020268269.13e-35transcription factor bHLH53-like
SwissprotQ9SA822e-20BH052_ARATH; Transcription factor bHLH52
TrEMBLA0A2H3YZA21e-29A0A2H3YZA2_PHODC; transcription factor bHLH52-like
STRINGXP_008806162.12e-30(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-23bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]