PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13752
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YB
Protein Properties Length: 127aa    MW: 14666.8 Da    PI: 8.4617
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13752genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.37e-5622115194
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 +reqdr+lP+an+srimkk+lP n+ki+kdaket+qecvsefisfvtseas+kcqrekrktingddllwa+atlGfe+y++plk+y++kyre+ 
  PEQU_13752  22 MREQDRYLPVANISRIMKKALPPNGKIAKDAKETMQECVSEFISFVTSEASEKCQREKRKTINGDDLLWAMATLGFEEYIDPLKLYMQKYREVI 115
                 59******************************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-5219118IPR009072Histone-fold
SuperFamilySSF471132.17E-3925121IPR009072Histone-fold
PfamPF008089.8E-292892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-225674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-227593No hitNo description
PRINTSPR006151.9E-2294112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
LEMSSPGDGC RENGERSPRS NMREQDRYLP VANISRIMKK ALPPNGKIAK DAKETMQECV  60
SEFISFVTSE ASEKCQREKR KTINGDDLLW AMATLGFEEY IDPLKLYMQK YREVISLNNK  120
MKLLRND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4921113193NF-YB
4awl_B2e-4921113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4921113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571723.12e-79nuclear transcription factor Y subunit B-1-like
SwissprotQ67XJ22e-59NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A2I0X8M03e-74A0A2I0X8M0_9ASPA; Nuclear transcription factor Y subunit B-8
STRINGXP_004493942.16e-67(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-62nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]