PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13881
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 325aa    MW: 37548 Da    PI: 9.122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13881genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.3e-133781899
                --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +p  f  ++ +g+   +    l+ +s  +W   l   kks++ +lt+GW++F+ +++L +gDf++Fk++g  + ++ v++f++
  PEQU_13881  3 IPPAFQ-QYvEGQ--APARFYLKGPSEYVWGADL--VKKSDGLFLTDGWENFAFDHDLVAGDFLLFKYNG--SLTFSVMIFDN 78
                566665.444555..34569999***********..*******************************987..55559999987 PP
2B350.63.6e-16232318598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ s+v     l+lp +f  +h   + ++ ++ l d++ ++W+v++i+++++    l++GW +F+  n+L+  D++vF+l++  +++l+v++fr
  PEQU_13881 232 MKGSYVYHGFYLTLPGPFPFKHL--PGCNGEVFLHDPNKQKWSVRYIFSRRP---ALSGGWGKFAVGNNLEIDDVCVFELIE--RRNLKVHIFR 318
                 56689999999*******87884..457779***************988887...7***********************997..5556999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.029179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-15281IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-11378IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-17381IPR015300DNA-binding pseudobarrel domain
CDDcd100172.82E-10377No hitNo description
SMARTSM010190.0064779IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-21220318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-23221318IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-21226318No hitNo description
SMARTSM010193.3E-12227320IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041228320IPR003340B3 DNA binding domain
PfamPF023626.5E-14231318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
QKIPPAFQQY VEGQAPARFY LKGPSEYVWG ADLVKKSDGL FLTDGWENFA FDHDLVAGDF  60
LLFKYNGSLT FSVMIFDNSA CEKEGAFFAR PTCDEKVSFS LDERLKEEEK EEAFVAMNQS  120
LKRKRTLLDT KNDCREVVMA TMWPRRRQPA ALISGRIERS RDTTYPFNKI MECSRDANLM  180
LSDKRTGDGS QKKQQHRGFV SQRRPVTQEE RDDALAKARS FKSDKPFMMM IMKGSYVYHG  240
FYLTLPGPFP FKHLPGCNGE VFLHDPNKQK WSVRYIFSRR PALSGGWGKF AVGNNLEIDD  300
VCVFELIERR NLKVHIFRVL EDVKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-2120132322146B3 domain-containing transcription factor VRN1
4i1k_B7e-2120132322146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593729.10.0B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A2I0W5D41e-177A0A2I0W5D4_9ASPA; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein