PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14520
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 203aa    MW: 22572.8 Da    PI: 10.2968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14520genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19123157135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  PEQU_14520 123 CTHCGAQKTPQWRAGPHGPKTLCNACGVRFKSGRL 157
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.912117153IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16117171IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14120179No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15121155IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.49E-11122179No hitNo description
PfamPF003201.5E-17123157IPR000679Zinc finger, GATA-type
PROSITE patternPS003440123148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
NDAADLEWLS RFVHDCNSEY QPTMASIKEN CRPCFSMEQP SPAASWRVKK EALIPVKAKR  60
SKRNRRTGIS WTMPCYSSVS STSSPSPSSS CSCSYASQES YHKKRGRKPK SSMPGGVCSE  120
RQCTHCGAQK TPQWRAGPHG PKTLCNACGV RFKSGRLLPE YRPACSPTFI SNIHSNKHRK  180
VLEMRRKKEG PFFAAAAPPV QSC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583972.11e-148GATA transcription factor 7-like
SwissprotO655155e-48GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A2I0VK313e-94A0A2I0VK31_9ASPA; GATA transcription factor 7
STRINGGSMUA_Achr4P24760_0012e-48(Musa acuminata)
STRINGGSMUA_Achr5P19930_0011e-48(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-47GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]