PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_14529

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SRS

Protein Properties

Length: 217aa MW: 23076.8 Da PI: 8.9655

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14529	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201.4	2.6e-62	1	157	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkrelkskkqsalsst 89 +sCqdCGnqakkdC h+RCRtCCksrgf+C thvkst paakrrerqqqlaaa++ +++++ a ++sk + + s t PEQU_14529 1 MSCQDCGNQAKKDCIHMRCRTCCKSRGFHCPTHVKST--PAAKRRERQQQLAAAAALHQQQRqpspshhraaastsaAGETSK-----RPRDLSVRLPT 92 68********************************9..*******999877666655455555443322111111111.....12222222233 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++s + + s+P+evss+avfrcvrvs +d++e+++aYqtav+igGh+fkGiLydqG+e+ PEQU_14529 93 IIATSTSGGTEGALSFPAEVSSPAVFRCVRVSPMDEAEDQFAYQTAVNIGGHLFKGILYDQGPES 157 333344444445566**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-61	1	156	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-23	2	39	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-26	108	155	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSCQDCGNQA KKDCIHMRCR TCCKSRGFHC PTHVKSTPAA KRRERQQQLA AAAALHQQQR 60 QPSPSHHRAA ASTSAAGETS KRPRDLSVRL PTIIATSTSG GTEGALSFPA EVSSPAVFRC 120 VRVSPMDEAE DQFAYQTAVN IGGHLFKGIL YDQGPESSST STQYQHLPHV GESSSAGAAG 180 RGPPAAAGLL SDPSSLYPAP LNAFMAGTQF FPHHPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583985.1	1e-126	protein SHORT INTERNODES-like, partial
Swissprot	Q9LQZ5	4e-63	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2I0VK45	1e-111	A0A2I0VK45_9ASPA; Uncharacterized protein
STRING	XP_008805615.1	3e-80	(Phoenix dactylifera)
STRING	GSMUA_Achr5P14410_001	8e-80	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-49	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]