PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_14562

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 145aa MW: 15978.9 Da PI: 4.6683

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14562	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	90	2.4e-28	1	71	30	100
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +k+dedvkmi+ae+P l+skacelfilelt sw + + kr+tl++ di+ +++ + fdflvdivp+++ PEQU_14562 1 MKSDEDVKMIAAEVPPLFSKACELFILELTHGSWCQVDREKRKTLQRGDISLEIAKHQAFDFLVDIVPEKK 71 9*******************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.97E-20	1	69	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-23	1	69	IPR009072	Histone-fold
Pfam	PF00808	2.3E-11	1	52	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MKSDEDVKMI AAEVPPLFSK ACELFILELT HGSWCQVDRE KRKTLQRGDI SLEIAKHQAF 60 DFLVDIVPEK KVAESGAAAS TSMTISGDEQ LNQSISCFHD PSMLDSLMMD FRNSETVPHC 120 SISTQQHQHS NASENGESAA PNLSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-23	1	69	27	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571601.1	1e-103	nuclear transcription factor Y subunit C-2-like isoform X1
Refseq	XP_020571603.1	1e-103	nuclear transcription factor Y subunit C-6-like isoform X3
Swissprot	Q9SMP0	2e-25	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2H9ZQS6	7e-41	A0A2H9ZQS6_9ASPA; Nuclear transcription factor Y subunit C-2
STRING	GSMUA_Achr9P11550_001	9e-26	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7345	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-28	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]