PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14880
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 113aa    MW: 13050.8 Da    PI: 9.7599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14880genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ G g+Wk++a+  g+ R +k+c++rw +yl
       PEQU_14880 11 KGKWTEEEDEILVKYIAENGEGSWKSVAKNTGLLRGGKSCRLRWINYL 58
                     79******************************99************97 PP
2Myb_DNA-binding55.61.2e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e++++  + +G++ W++Ia+ ++ gRt++++k++w+++l
       PEQU_14880  64 RGNFSKEEEEIIIKFQASYGNR-WSLIASNLP-GRTDNEIKNYWNSHL 109
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-23261IPR009057Homeodomain-like
PROSITE profilePS5129424.66662IPR017930Myb domain
SuperFamilySSF466891.76E-298105IPR009057Homeodomain-like
SMARTSM007178.2E-141060IPR001005SANT/Myb domain
PfamPF002494.0E-171158IPR001005SANT/Myb domain
CDDcd001672.11E-101358No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2562113IPR009057Homeodomain-like
SMARTSM007171.2E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.10363113IPR017930Myb domain
PfamPF002496.5E-1664109IPR001005SANT/Myb domain
CDDcd001671.25E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
TPCCEKNGLR KGKWTEEEDE ILVKYIAENG EGSWKSVAKN TGLLRGGKSC RLRWINYLKA  60
GVKRGNFSKE EEEIIIKFQA SYGNRWSLIA SNLPGRTDNE IKNYWNSHLC RRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25911325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584902.18e-77myb-related protein P-like
SwissprotP278985e-59MYBP_MAIZE; Myb-related protein P
TrEMBLA0A097A5N21e-57A0A097A5N2_MAIZE; Myb-like transcription factor
TrEMBLQ944N21e-57Q944N2_MAIZE; Myb-like transcription factor P1
STRINGGRMZM2G051256_P015e-58(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-50myb domain protein 111
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]