PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_14966

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 200aa MW: 22473.6 Da PI: 7.8785

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14966	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	95	113	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 +kC dC++sFs++ L H PEQU_14966 95 HKCRDCNMSFSSHKALGGH 113 79**********9998666 PP
2	zf-C2H2	13	0.00032	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC dC+ Fs+ L H+r+H PEQU_14966 148 HKCYDCSSEFSSGQALGEHMRKH 170 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.9E-5	94	119	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.35E-5	94	170	No hit	No description
SMART	SM00355	55	95	115	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.265	148	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	148	170	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.7E-7	148	172	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEESTIMKEK RTKQQRHHLL PHVISPILSP TTLLEISESP TEEEEEMANC LIFLAKGGYK 60 PKLNEIEEAT TAVNLTGRVT EPTTTATGKT ENNVHKCRDC NMSFSSHKAL GGHRASYNKK 120 LKLSIPLASK VLNEFPFTSS VMIKVKSHKC YDCSSEFSSG QALGEHMRKH RQLITPEQTK 180 KEDNSKAFYL DLNLPPPCDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592809.1	1e-148	zinc finger protein ZAT5-like
STRING	XP_008787454.1	3e-37	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-18	C2H2 family protein