PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_14967

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 154aa MW: 17441.4 Da PI: 8.5071

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14967	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg F++ L H+r+H PEQU_14967 92 HQCLTCGNEFNSDQALGGHMRKH 114 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.97E-5	32	54	No hit	No description
SMART	SM00355	26	32	54	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.97E-5	87	114	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.7E-4	90	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.21	92	114	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.2E-8	92	116	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.242	92	119	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MDEATTAMNI TSWRFVEPAT TTTNDKSGNN AHQYRDCNRC FSSRQTLGWH HASHNKTRKL 60 SIPRLSKVMN LNSTQFTIKL LSSPATNKVK IHQCLTCGNE FNSDQALGGH MRKHSAPTTP 120 EPSQKEDNSK RFYLDLNLPP PCNDFEDNDA REGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592810.1	1e-114	zinc finger protein ZAT5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-19	C2H2 family protein