PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14983
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 330aa    MW: 37201.9 Da    PI: 6.9839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14983genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17e-53231501128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelv++yL++kv + ++     i evd++++ePw+Lp+++k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+++ +g+
  PEQU_14983  23 LPPGFRFHPTDEELVTFYLAAKVFNGNICG-VDIVEVDLNRCEPWELPEAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVHAAaTGS 120
                 79*************************877.34***************988999***************************************987889 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 lvg+kktLvfykgrap+gekt+Wv+heyrl
  PEQU_14983 121 LVGMKKTLVFYKGRAPRGEKTRWVLHEYRL 150
                 9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6218172IPR003441NAC domain
PROSITE profilePS5100558.6323172IPR003441NAC domain
PfamPF023652.7E-2724150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSAMGGELGW EIFGEEVSGE QGLPPGFRFH PTDEELVTFY LAAKVFNGNI CGVDIVEVDL  60
NRCEPWELPE AAKMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD REVHAAATGS  120
LVGMKKTLVF YKGRAPRGEK TRWVLHEYRL HGDFSFRHAC KEEWVICRIF HKGGGDLKKN  180
TYFPNSTYFL DPSCSSLNSC ISPLLEHTQN LENPINSLPQ NHHNPHFPHT LENPSLLFPF  240
PLPQPFPSTG HFHSLFKYPL TTNEQIKRAP THEESFSNWL ESCLQKPSSS SYDTSHNYFG  300
LHPIQGGAPV LHDTTFVGSS VALQSGSLVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49151727168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592812.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8518e-91NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2I0W0I10.0A0A2I0W0I1_9ASPA; Protein CUP-SHAPED COTYLEDON 3
STRINGGSMUA_Achr9P20090_0011e-125(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.15e-93NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]