PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15056
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YC
Protein Properties Length: 157aa    MW: 18330.9 Da    PI: 6.1121
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15056genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.22.4e-53311341101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+ fw++q   ie++ dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+diaaa+trtd+fdflvdiv
  PEQU_15056  31 QLQLFWADQyreIEQTVDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKNDIAAAITRTDVFDFLVDIV 129
                 89*****999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+e 
  PEQU_15056 130 PREEG 134
                 **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.2E-3217125IPR009072Histone-fold
PfamPF008081.5E-2153116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-3754131IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
SVPPPLFPTL PRQQQAAYQH LYQQQQQQQQ QLQLFWADQY REIEQTVDFK NHNLPLARIK  60
KIMKADEDVR MIAAEAPVVF ARACEMFILE LTHRGWAHAE ENKRRTLQKN DIAAAITRTD  120
VFDFLVDIVP REEGRDEAVP RAIPGGPVDP MYYYVQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5739131395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584320.16e-87LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE334e-64NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A2I0A0T43e-87A0A2I0A0T4_9ASPA; Nuclear transcription factor Y subunit C-2
STRINGXP_008802191.14e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-63nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]