PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15094
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 162aa    MW: 19010 Da    PI: 10.0917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.4e-5471331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 l pGfrFhPtdee++++yL +kv + +++   +i e   +++ePwdLp k++ +ekewyfF+krd+ky+tg r+nrat+sgyWkatgkdke+++ kg l
  PEQU_15094   7 LLPGFRFHPTDEEIITHYLLEKVMDLSFKS-IAIGEGSFNECEPWDLPGKANMGEKEWYFFCKRDRKYPTGMRTNRATSSGYWKATGKDKEIFRGKGFL 104
                 579************************999.88***************99999*****************************************999** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvfy+grap+g kt+Wvmheyrl
  PEQU_15094 105 VGMKKTLVFYSGRAPRGMKTKWVMHEYRL 133
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-565143IPR003441NAC domain
PROSITE profilePS5100551.3397155IPR003441NAC domain
PfamPF023651.5E-299133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDGGLHLLPG FRFHPTDEEI ITHYLLEKVM DLSFKSIAIG EGSFNECEPW DLPGKANMGE  60
KEWYFFCKRD RKYPTGMRTN RATSSGYWKA TGKDKEIFRG KGFLVGMKKT LVFYSGRAPR  120
GMKTKWVMHE YRLDGKYQYN KFSTSHQVHI LIFKLKFCSF KH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-48213310140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584356.11e-108LOW QUALITY PROTEIN: NAC domain-containing protein 79-like
SwissprotQ9SQQ69e-75NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2I0WVW02e-99A0A2I0WVW0_9ASPA; NAC domain-containing protein 100
STRINGGorai.013G118000.16e-77(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.29e-78Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]