PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15120
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARR-B
Protein Properties Length: 647aa    MW: 71225.3 Da    PI: 6.6148
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15120genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.24.3e-19215258145
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+
  PEQU_15120 215 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVDKLTREN 258
                 79*******************.********************987 PP
2Response_reg761.4e-25261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l + +y +v+++ ++ +al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge + + + +  Ga 
    PEQU_15120  26 VLAVDDDPICLKVLETLLLRCKY-HVTTTNQAIKALNMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETSAVMNGITHGAC 120
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
    PEQU_15120 121 DYLLKPVRIEELRN 134
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1621644IPR017053Response regulator B-type, plant
SuperFamilySSF521725.69E-3523151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.6E-4223160No hitNo description
SMARTSM004485.9E-3124136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.7825140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2226135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.73E-2627139No hitNo description
Gene3DG3DSA:1.10.10.606.1E-20212266IPR009057Homeodomain-like
SuperFamilySSF466891.04E-11213266IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-16215258IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MTVEEKRGAM VRDEGHGDQF PIGMRVLAVD DDPICLKVLE TLLLRCKYHV TTTNQAIKAL  60
NMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETSA VMNGITHGAC  120
DYLLKPVRIE ELRNIWQHVV RRRKFDHKER QSFDNGDDQD KPQSANSEGT QAVGENGPLD  180
LSGKVNRKRK DQNDEDEDYC EDNTHDSEDP SSQKKPRVVW SVELHRKFVA AVNQLGIDKA  240
VPKRILDLMN VDKLTRENKY RLYLKRLSAV ASQQASMAAV LGGRDASYLH MASFNGFGTF  300
HGLSSSAPLQ GFAPFQPNGI SSRPNPNLLG LPGLAPGTVQ IRSQNTTNNP MNDLSKFQHL  360
PVPSNQHENL LQGIPTSLEL DQLQQKQKRI QEANHRSPGV FSGTSNNNFI SAANSSLLLP  420
SIAIPSIGAD RLEMSSGCNE SWQNAPSLSG YNANTLSMGG PYGNDCVASN NMGGNLASTV  480
PPFNGNPMNI SSNNLLVTAG NALLMPSGIE VDPKFLSFRC SANPKQRSED SVQHNEITLN  540
SSLTSTLPNQ TLLNTVADTQ SLQGRIYNKK VDLGMMNQPS FDSSLTSQHA KMNKTNIESR  600
LFFNEENLLG SSKMQGGFAS SSCNFDELMN AMIKPVRFHF SASLTLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20211268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575988.10.0two-component response regulator ORR23
RefseqXP_020575989.10.0two-component response regulator ORR23
SwissprotQ6K8X61e-168ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2I0XCH70.0A0A2I0XCH7_9ASPA; Two-component response regulator ARR12
STRINGXP_008794326.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-114response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]