PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_15186

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24105.4 Da PI: 8.895

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_15186	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F k+r++ ++ LA+++gL+ +qV +WFqNrRa++k PEQU_15186 56 KKRRLSEEQVRFLEMNFDKERKLESCRKVNLATEIGLDPKQVAIWFQNRRARWK 109 56689************************************************9 PP
2	HD-ZIP_I/II	117	1.1e-37	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE++F++e+kLe+ rKv+la+e+gl+p+qva+WFqnrRAR+k+kq+E++y++L+++++a+ +e+ +Le+e ++L+++l PEQU_15186 56 KKRRLSEEQVRFLEMNFDKERKLESCRKVNLATEIGLDPKQVAIWFQNRRARWKSKQIEEEYTHLRSSHNAILAEKLQLENELSNLKDKLV 146 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.872	51	111	IPR001356	Homeobox domain
SMART	SM00389	8.1E-15	54	115	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-15	56	109	IPR001356	Homeobox domain
CDD	cd00086	6.07E-14	56	112	No hit	No description
SuperFamily	SSF46689	2.31E-17	56	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-18	58	118	IPR009057	Homeodomain-like
PRINTS	PR00031	3.8E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.8E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAAVMKSMEE DESLFSSIIS SGFYPQMARG ESKERRTRKK AKDVPNGDAE VYGQGKKRRL 60 SEEQVRFLEM NFDKERKLES CRKVNLATEI GLDPKQVAIW FQNRRARWKS KQIEEEYTHL 120 RSSHNAILAE KLQLENELSN LKDKLVQSEQ EIRRLTSPSI SAAAGGGSPI SLTMPTHLGK 180 FAMEKENAMQ MSALADNYYD VMEMSYFYGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	58	RKKAKDVPNGDAEVYGQGKKRR
2	103	111	RRARWKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020584233.1	1e-156	homeobox-leucine zipper protein HOX12-like isoform X1
Swissprot	A2YN17	9e-39	HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	8e-39	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A2I0XGP6	2e-96	A0A2I0XGP6_9ASPA; Homeobox-leucine zipper protein HOX14

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	8e-39	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]