PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_15233

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 214aa MW: 23214.4 Da PI: 8.5044

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_15233	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.1	9.2e-31	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++Cvl+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++ ++++ l+q++++ PEQU_15233 2 SCNGCRVLRKGCSESCVLRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLYEACGRTINPVNGAVGLLATGNWSLCQAAVDK 100 6**********************************************************************************************9887 PP DUF260 95 al 96 +l PEQU_15233 101 VL 102 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.221	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-25	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCVLR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLYE ACGRTINPVN GAVGLLATGN WSLCQAAVDK VLRGGTLSPQ PELAGAKTGN 120 FLTEAEGDGE ICARPRNNWP PSFSAAKRRK FPIAADRTQP PADLHLCLTQ RSSAPTGMDD 180 KRRPGSPSMN SEESVTTTED NFHDRRPRLL NLLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020584238.1	1e-158	LOB domain-containing protein 37-like
Swissprot	Q9SN23	8e-71	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2I0WPW0	1e-126	A0A2I0WPW0_9ASPA; LOB domain-containing protein 38
STRING	XP_008787166.1	3e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-73	LOB domain-containing protein 38