PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15257
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 221aa    MW: 25554.8 Da    PI: 7.381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15257genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+d++ q+G g+W++I+++ g+ R +k+c++rw +yl
       PEQU_15257 15 KGLWSPEEDQKLKDYILQYGHGCWSSIPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding59.47.9e-1968113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T eE+e+++ ++++lG++ W++Ia++++ gRt++++k++w++yl
       PEQU_15257  68 RGIFTSEEEEIILSLHAKLGNK-WSRIAAHLP-GRTDNEIKNYWNSYL 113
                      7889******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2381062IPR017930Myb domain
SuperFamilySSF466892.58E-3012109IPR009057Homeodomain-like
SMARTSM007171.1E-121464IPR001005SANT/Myb domain
PfamPF002496.0E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241669IPR009057Homeodomain-like
CDDcd001676.28E-111862No hitNo description
PROSITE profilePS5129427.36463117IPR017930Myb domain
SMARTSM007174.8E-1767115IPR001005SANT/Myb domain
PfamPF002495.5E-1768113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2870117IPR009057Homeodomain-like
CDDcd001671.16E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRLRTSEKQK VSFRKGLWSP EEDQKLKDYI LQYGHGCWSS IPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGI FTSEEEEIIL SLHAKLGNKW SRIAAHLPGR TDNEIKNYWN SYLKKKIMQL  120
NPNDPITTSK ERNNSVDQSF KSDNFVSEYS NNQISTSSCS TTVDYGSFKS SFPKVLFEEW  180
LSPQDVGRDE FDGNALFEEM QSLDMLGEMM GDIDMCYDSI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584219.11e-165transcription factor LAF1-like
TrEMBLA0A2I0VMC81e-128A0A2I0VMC8_9ASPA; Transcription factor LAF1
STRINGXP_008794566.11e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-59myb domain protein 45