PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15464
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 105aa    MW: 12034.9 Da    PI: 10.2003
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15464genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.2e-171851134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C +C + kTp+WR gp g+ktLCnaCG++y + +
  PEQU_15464 18 CLHCESHKTPQWRAGPMGPKTLCNACGVRYMSGR 51
                99***************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-111266IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.3431247IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-151775No hitNo description
Gene3DG3DSA:3.30.50.107.5E-141748IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-111774No hitNo description
PROSITE patternPS0034401843IPR000679Zinc finger, GATA-type
PfamPF003203.6E-141850IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEKTQKSNVV DRDRLKKCLH CESHKTPQWR AGPMGPKTLC NACGVRYMSG RLFPEYRPAT  60
SPKFTPFVHS NSHKKVVEMR QEKANLSSPN GDVAKCELLD YIRNK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579271.11e-69uncharacterized protein LOC110023949
RefseqXP_020595248.12e-74GATA transcription factor 4-like
SwissprotQ9SV301e-35GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A2I0WIN13e-48A0A2I0WIN1_9ASPA; GATA transcription factor 9
STRINGGSMUA_Achr2P02830_0012e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-38GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]