PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15682
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 432aa    MW: 47606.8 Da    PI: 7.6378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15682genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08120140526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f + GtC+yG++C+F H+
  PEQU_15682 120 ICNHFIA-GTCSYGENCRFLHS 140
                 7998888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6382753IPR000571Zinc finger, CCCH-type
SMARTSM003560.62952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164115142IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5115141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-6119140IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5120140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.3E-41141430IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-4146185IPR001680WD40 repeat
SuperFamilySSF509785.4E-41148430IPR017986WD40-repeat-containing domain
PfamPF004002.2E-4149185IPR001680WD40 repeat
PROSITE profilePS5029418.484153402IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.814153194IPR001680WD40 repeat
PROSITE patternPS006780172186IPR019775WD40 repeat, conserved site
PRINTSPR003206.0E-7172186IPR020472G-protein beta WD-40 repeat
SMARTSM0032022225262IPR001680WD40 repeat
SMARTSM003200.0033269306IPR001680WD40 repeat
PfamPF004000.015274306IPR001680WD40 repeat
PROSITE profilePS5008210.642276315IPR001680WD40 repeat
PRINTSPR003206.0E-7293307IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780293307IPR019775WD40 repeat, conserved site
SMARTSM003200.0012309346IPR001680WD40 repeat
PfamPF004000.012311345IPR001680WD40 repeat
PRINTSPR003206.0E-7333347IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9350393IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDIEPVKRYG NKRVNHRRGS SQAAPDRTSN KVCYHWRAGR CSRFRCPYRH SELPQPPDGA  60
ISNRSAFNEN RGFHSQGLVW RNSKSYNASI NQGPSSRWGK DHPGEVSGIS KPLLKFHDKI  120
CNHFIAGTCS YGENCRFLHS WFVSDSISLL TPLTGHQKGV SGFALPAGSD KLYTGSKDES  180
VRLWDCETGQ CAGLINLGGE VGCMIDEGPW IFVGIPNSIK AWNTQSATDL SLSGPTGQVY  240
AMAVGNELLF AGIQDGSILA WKFICVENRF EPAASLIGHQ LAVVSLVVGA MRLYSGSMDH  300
TIKVWDICTL QCIQTLTDHT SVVMSLLCWN QFLLSCSLDS TVKVWVATES GNLEVTYTHN  360
EGQGVLALRG MHDAQNKPVL FSSCNDDTVR LYDLPSFSER GRIYSKQEVR AIQAGPGGLF  420
FTGDETGEIR RD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-21903968323Tako8
6g6n_A2e-21903968323Tako8
6g6n_B2e-21903968323Tako8
6g6n_C2e-21903968323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572439.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A2I0V7M10.0A0A2I0V7M1_9ASPA; Zinc finger CCCH domain-containing protein 17
STRINGGSMUA_Achr4P24880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]