PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16237
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 267aa    MW: 29881.9 Da    PI: 9.8499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.99.9e-33291691128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 
                 lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+++      + +W++
  PEQU_16237  29 LPAGVKFDPTDQELL-EHLEGKARPDLqklhplIDEFIPtIEGQnGICYTHPQKLP-GVTRDGLIRHFFHRPSKAYTTGTRKRRKVHtddhggETRWHK 125
                 799************.99**99887664454443332233665556**********.454555677******************744456655778*** PP

         NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 tgk+++vl+ +g ++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PEQU_16237 126 TGKTRPVLV-EGGVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 169
                 *********.8889**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-3724188IPR003441NAC domain
PROSITE profilePS5100532.59629188IPR003441NAC domain
PfamPF023652.6E-1530169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MIAKLCSSCG HRIQADHQGG GAIEDLPGLP AGVKFDPTDQ ELLEHLEGKA RPDLQKLHPL  60
IDEFIPTIEG QNGICYTHPQ KLPGVTRDGL IRHFFHRPSK AYTTGTRKRR KVHTDDHGGE  120
TRWHKTGKTR PVLVEGGVKG YKKILVLYTN YGKQRKPEKT NWVMHQYHLG SNEEEKDGEL  180
VVSKVFFQTQ PRQCGSTIMT TKSSTIKMKS KGLNGDQDGQ ILKEASIVDF YSPSLIPNYN  240
QGGNHRPSSP HLIPNFSLQG RGSSFLH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573142.10.0NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-113NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2I0WM941e-175A0A2I0WM94_9ASPA; NAC domain-containing protein 8
STRINGXP_008789978.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-113NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]