PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16338
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 754aa    MW: 81734.9 Da    PI: 5.6878
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16338genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21.1e-2160115156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+lgL++rqVk+WFqNrR+++k
  PEQU_16338  60 KKRYHRHTPKQIQELEALFKECPHPDEKQRLELSKRLGLETRQVKFWFQNRRTQMK 115
                 688999***********************************************999 PP
2START171.17.4e-542694952206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la++a++el+k+a+ +ep+W         e +n + +   f+++ +     + +ea r++++v+ ++  lve+l+d + +W  +++    + +t++ is
  PEQU_16338 269 LALSAMDELLKMAEMGEPLWIVAGqgngrETLNFKQYEEMFPSGISvkevgFVSEATRETAMVIINSIALVETLMDAA-RWADMFPgiiaRTATTDIIS 366
                 6899****************98887777766666666666666655888899**************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 +g      galqlm aelq+lsplvp R++ f+R+++ql +  w +vdvSvd  +++ +  s+ ++++++lpSg+++++++ng+skvtwveh+ ++++ 
  PEQU_16338 367 PGvggsrnGALQLMHAELQVLSPLVPiREVNFLRFCKQLADAAWGVVDVSVDAIRDNHTsaSAASAKCRRLPSGCVVQDMPNGYSKVTWVEHAAYEESA 465
                 ******************************************************9999999999*********************************** PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  h+l+r+l++sgla ga++wvatlqrqce+
  PEQU_16338 466 AHQLYRPLLRSGLALGAQRWVATLQRQCEC 495
                 ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2147117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-2247111IPR009057Homeodomain-like
PROSITE profilePS5007118.09157117IPR001356Homeobox domain
SMARTSM003892.5E-2058121IPR001356Homeobox domain
PfamPF000462.9E-1960115IPR001356Homeobox domain
CDDcd000865.30E-2060118No hitNo description
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PROSITE profilePS5084841.192259498IPR002913START domain
SuperFamilySSF559615.77E-28262495No hitNo description
CDDcd088752.83E-113263494No hitNo description
SMARTSM002342.0E-38268495IPR002913START domain
PfamPF018521.4E-45269495IPR002913START domain
SuperFamilySSF559613.19E-22523747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
QSNLENQGDY NRLASIGGGG GVGELDGICR NKEDENESRS GSDNFEGGSG DDLDENPRKK  60
KRYHRHTPKQ IQELEALFKE CPHPDEKQRL ELSKRLGLET RQVKFWFQNR RTQMKTQMER  120
HENTILRQEN DKLRAESITI RDAMRNPVCS NCGGPAVLGE VSLEEQHLRI ENARLKDELD  180
RVCTLAGKFI GRPISSLASS ISTMPNSSLE LAVGGNAFGA FGPAPHTFSS VTDFVAAASS  240
PLGTVITPPV RASIPPVDRS LERSVFLDLA LSAMDELLKM AEMGEPLWIV AGQGNGRETL  300
NFKQYEEMFP SGISVKEVGF VSEATRETAM VIINSIALVE TLMDAARWAD MFPGIIARTA  360
TTDIISPGVG GSRNGALQLM HAELQVLSPL VPIREVNFLR FCKQLADAAW GVVDVSVDAI  420
RDNHTSASAA SAKCRRLPSG CVVQDMPNGY SKVTWVEHAA YEESAAHQLY RPLLRSGLAL  480
GAQRWVATLQ RQCECLAILM SSSVTNSDHT AIMAAGRRSM LKLAQRMTDN FCAGVCASSA  540
RKWSRLANMG SSIGEDVRVM TRQSMEDPGE PPGVVLSAAT SVWLPVSPNR LFDFLRNESL  600
RSQWDILSNG GPMQEMAHIA KGQDQGNAVS LLRVSAVSAN QSSMLILQET CTDESGSMVV  660
YAPVDVPAMH VVMNGGDSAY VALLPSGFAV MPDGQVAEDG EGKMGGGGSL LTVAFQILVN  720
SLPMAKLTVE SVETVNNLIS CTVQKIKAAL HCEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585632.10.0homeobox-leucine zipper protein ROC5-like
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A2I0X8660.0A0A2I0X866_9ASPA; Homeobox-leucine zipper protein ROC5
STRINGXP_008799528.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]