PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16438
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20148.1 Da    PI: 10.6966
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16438genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.5e-311161151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+++nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifss+g+lyeyss
  PEQU_16438 11 KRIESTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIIFSSRGRLYEYSS 61
                79***********************************************96 PP
2K-box935.2e-3181165891
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                 s +e + ++++qqe+akL+ +++ Lq+ +Rhl+Ge+L sLs+keL+qLe++Le+++++iRskK+e+l+++ie +qk+ +++ +++
  PEQU_16438  81 SvVEINSQQYYQQEAAKLRHQMQILQNANRHLIGEGLASLSIKELKQLESRLERAITRIRSKKQEMLFSEIEFMQKRVRATISHH 165
                 25778899*********************************************************************99876666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.375363IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-33477IPR002100Transcription factor, MADS-box
CDDcd002652.07E-42478No hitNo description
PRINTSPR004042.0E-32525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261259IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-322540IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-324061IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2284161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.17488173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
REMGRGKIQI KRIESTTNRQ VTFCKRRNGL LKKAYELSIL CDAEVALIIF SSRGRLYEYS  60
SHSTKSTIER YKSTSANGPN SVVEINSQQY YQQEAAKLRH QMQILQNANR HLIGEGLASL  120
SIKELKQLES RLERAITRIR SKKQEMLFSE IEFMQKRVRA TISHHSMKNH NSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22379175MEF2C
5f28_B1e-22379175MEF2C
5f28_C1e-22379175MEF2C
5f28_D1e-22379175MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575771.11e-109MADS-box transcription factor 21-like
RefseqXP_020575772.11e-109MADS-box transcription factor 21-like
RefseqXP_020575773.11e-109MADS-box transcription factor 21-like
SwissprotA0A217EJJ06e-81AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A2Z5CU364e-91A0A2Z5CU36_9ASPA; AGAMOUS-like transcription factor
TrEMBLK4JEZ83e-91K4JEZ8_9ASPA; D-class MADS-box-like protein
STRINGXP_008781978.18e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.17e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  2. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  3. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  4. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]