PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_16592

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 325aa MW: 37708 Da PI: 8.5208

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_16592	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.7	4e-18	33	117	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGF+vrk+++++ +++++ + +++ k g+++e +++ + ++a trtgCka+++ + + +g+w v+k++++HnH++ PEQU_16592 33 YHAYAHHVGFTVRKDHTTYWSNSKKLKVKDYIYGKAGYKKEPNNT---VKFRKADTRTGCKAMVRFHVDFEGNWTVAKFSENHNHPFI 117 9*****************************9999999998877...888999*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-15	33	117	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.458	239	275	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-5	247	273	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	250	277	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQSFQATQVC NDPIAEKFLI SIIHSDEEAY ESYHAYAHHV GFTVRKDHTT YWSNSKKLKV 60 KDYIYGKAGY KKEPNNTVKF RKADTRTGCK AMVRFHVDFE GNWTVAKFSE NHNHPFIKSG 120 DKHLLHSNRR IIGGVENLEC AKRDAFNFIQ RERRQRIEQG DVNALIQFFM ERQSGDSMFA 180 WDFQTYESGR LTSIFWSDGL CRLDYDCFGD VIIFYTSYRL NKYNLCCAPF VGVNNHQPWN 240 VLVDKVTCEV TCSCKKFDMM GLLCSHALFI LSLAKIKVIL EIYFLLRWSI NAKRDTYNGF 300 GCKELKDSRC NNVSSSSLIF SSCSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574582.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020592540.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VFB6	9e-77	A0A2I0VFB6_9ASPA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I0VPA5	9e-76	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-23	FAR1-related sequence 5