PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17021
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 231aa    MW: 26923.6 Da    PI: 9.7246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+  ++++G ++W++I+++ g+ R++k+c++rw +yl
       PEQU_17021 14 RGPWTCEEDRILISHIEKYGHENWRAIPKKAGLFRCGKSCRLRWANYL 61
                     89********************************************97 PP
2Myb_DNA-binding46.11.1e-1467111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++ ++ ++ +lG++ W++Ia++++ gRt++++k+ w+ +
       PEQU_17021  67 RGNFSKEEEDTIISLHSLLGTR-WSAIAAKLP-GRTDNEIKNLWHGH 111
                      89********************.*********.*********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129422.428965IPR017930Myb domain
SuperFamilySSF466896.7E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002495.2E-151461IPR001005SANT/Myb domain
CDDcd001671.38E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2365115IPR009057Homeodomain-like
PROSITE profilePS5129417.86466116IPR017930Myb domain
SMARTSM007171.6E-1266114IPR001005SANT/Myb domain
PfamPF002491.5E-1367111IPR001005SANT/Myb domain
CDDcd001673.94E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVRAPCCDNM GVRRGPWTCE EDRILISHIE KYGHENWRAI PKKAGLFRCG KSCRLRWANY  60
LRPGIKRGNF SKEEEDTIIS LHSLLGTRWS AIAAKLPGRT DNEIKNLWHG HLKKRFDPKK  120
NVKQLSKQKN RRDYKANMEF KEAKHGEHVN SPASFTNADQ DFTSTVINTV GGGNKSETMY  180
KNYQHFRFDE SLWFEPQQFM MDFSVNEISI TEALNPMSFY NGESLNLWLN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589781.11e-176myb-related protein Myb4-like
SwissprotQ6K1S64e-68MYB30_ORYSJ; Transcription factor MYB30
STRINGXP_008785342.14e-70(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-68myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]