PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17258
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 227aa    MW: 26105.5 Da    PI: 5.4554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17258genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-18956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
       PEQU_17258  9 KGPWTEQEDLQLVCFVSLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding56.75.4e-1862107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l++d++ q+G++ W++Ia++++ gRt++++k++w++++
       PEQU_17258  62 RGRITPQEERLILDLHSQWGNR-WSRIAQRLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.864460IPR017930Myb domain
SuperFamilySSF466892.46E-306103IPR009057Homeodomain-like
SMARTSM007171.9E-16858IPR001005SANT/Myb domain
PfamPF002497.5E-17956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-211063IPR009057Homeodomain-like
CDDcd001671.92E-111156No hitNo description
SMARTSM007171.2E-1661109IPR001005SANT/Myb domain
PROSITE profilePS5129420.62261111IPR017930Myb domain
PfamPF002491.0E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2564109IPR009057Homeodomain-like
CDDcd001673.71E-1166107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVVTKGIRKG PWTEQEDLQL VCFVSLFGER RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGRITPQEE RLILDLHSQW GNRWSRIAQR LPGRTDNEIK NYWRTHMRKM AQETKKCSPL  120
SSSCSSESEQ LEDTSGIMEN QEQSSYMMKK PIEIKEEDEV KVYPMDQIWN ELAATFESTT  180
SGLSFESYGS GACNISCAFA MASPAWENCA ESLWKIDDDE LCIGIES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2791094103MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-27210951157MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-27210951157MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2791094103C-Myb DNA-Binding Domain
1msf_C1e-2791094103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583391.11e-170transcription factor MYB59-like isoform X2
SwissprotQ4JL762e-77MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A2I0X4M11e-118A0A2I0X4M1_9ASPA; Myb-related protein MYBAS2
STRINGGSMUA_Achr2P16200_0018e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-77myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]