PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17261
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12958 Da    PI: 9.7027
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17261genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.2e-231864147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                krien+  rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk +
  PEQU_17261 18 KRIENEEARQVCFSKRRSGLFKKATELSILCGAEIGIVVFSPAGKPF 64
                79*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-341069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.6611070IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-281079IPR002100Transcription factor, MADS-box
CDDcd002651.69E-351179No hitNo description
PRINTSPR004041.5E-211232IPR002100Transcription factor, MADS-box
PfamPF003193.1E-271966IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MMERKKRQSM GRQKIAMKRI ENEEARQVCF SKRRSGLFKK ATELSILCGA EIGIVVFSPA  60
GKPFSFGHPS LDYITRRFLS GGTGAAAAGQ LCGMLVDSEK LHHLNEEHAG ELDWIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-161078169MEF2C
5f28_B1e-161078169MEF2C
5f28_C1e-161078169MEF2C
5f28_D1e-161078169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583373.14e-75agamous-like MADS-box protein AGL29
SwissprotQ4PSU46e-30AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A2I0VT523e-57A0A2I0VT52_9ASPA; Agamous-like MADS-box protein AGL61
STRINGGSMUA_Achr5P26530_0011e-40(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-32AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]