PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17287
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 407aa    MW: 45207.1 Da    PI: 8.989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17287genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-065577123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F r  nL+ H r+H
  PEQU_17287 55 YVCEICNQGFQRDQNLQMHRRRH 77
                9*********************9 PP
2zf-C2H212.20.00057134155223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C  C+k +  +s++k H++t+
  PEQU_17287 134 ACARCTKAYAVHSDYKAHLKTC 155
                 6*******************98 PP
3zf-C2H211.10.0013163181523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr +++  H+ t+
  PEQU_17287 163 DCGRVFSRVESFIEHQDTC 181
                 9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.41E-55278No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035511097127IPR015880Zinc finger, C2H2-like
SMARTSM00355270133160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLVSPSPVPP AATSLPAPPN ASSATKRKRR PAGTPDPEAE VVSLSPRTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRESGS ETRKRVFVCP EPSCLHHDPS HALGDLVGIK  120
KHFRRKHSAH KQWACARCTK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT  180
CNAGRARQPC LSLSASSQSP SSDQTVFIPP SAVLPTSSPS SAAMWPVFRC PNTARTASFF  240
LQPDHYSPSS SSHALRRPPN IELQLLPAEP GIPASTPSPS SDDTRAAKLE LTIGSSRVKD  300
EREMAEEARQ EAKRQMELAN QEFANAKRIR QQAQLELNKA LALRDRAAKK IHSILLEITC  360
LSCKQQFHSK ATAAQMLLSD DYSLAASYIS SVMIEREGDE ENLDHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17129183357Zinc finger protein JACKDAW
5b3h_F7e-17129183357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575914.10.0protein indeterminate-domain 16-like isoform X1
SwissprotQ9C9X71e-133IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2I0XFQ30.0A0A2I0XFQ3_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008789229.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-118indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]