PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17358
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 187aa    MW: 19611.4 Da    PI: 6.8615
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer666.9e-211461057
  ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 ++NhAa+lG++a DGCgEf ++eg+   +a+  C+ACgCHRnFHR+  
   PEQU_17358  1 MRNHAAALGAYASDGCGEFSADEGS--ISATHFCSACGCHRNFHRKLL 46
                 69*******************8444..478889************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152319.001145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.2E-16144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-11144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-16244IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.6E-2462133IPR009057Homeodomain-like
SuperFamilySSF466895.38E-1366132IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-2572132IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRNHAAALGA YASDGCGEFS ADEGSISATH FCSACGCHRN FHRKLLDVSG YSSYYPSETA  60
AMAVSDNRSD GRRRFRTKFT GEQKAQMRSF ADRLGWLMPR RSDAEEEIEV EKFCAEIGVS  120
RHVFRVWMHN HKGNGVAGGG GGAAPANSSS ATNNSDGDVV GCSGGGGGGG RGESEELGGD  180
GKSGTSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-19731391880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573270.11e-134zinc-finger homeodomain protein 11-like
SwissprotA2XLF49e-36ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV59e-36ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A2I0WCY11e-76A0A2I0WCY1_9ASPA; Transcription factor HB29
STRINGPOPTR_0012s03770.18e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-32homeobox protein 31