PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17360
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 205aa    MW: 23137.5 Da    PI: 9.4582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17360genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.12.1e-085678123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C +sF+r+ nL+ H+r+H
  PEQU_17360 56 YVCEICLQSFRRSQNLQMHLRRH 78
                9*********************9 PP
2zf-C2H212.20.00054134154323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C  C+k +   s++k H++t+
  PEQU_17360 134 CARCSKAYAVLSDYKAHLKTC 154
                 99*****************98 PP
3zf-C2H213.90.00016160180323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C dCg++Fsr + +  H+ ++
  PEQU_17360 160 CCDCGRVFSRVEAFIEHQDSC 180
                 *****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-55379No hitNo description
Gene3DG3DSA:3.30.160.603.9E-65578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7625678IPR007087Zinc finger, C2H2
SMARTSM003550.00255678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035523096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-5123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355120158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MFIIPSSNPP EESEQPPSSA LNAATTKKKR RPAGTPDPEA EVISLSPHTL LESERYVCEI  60
CLQSFRRSQN LQMHLRRHRV PWKLAAKRTE SKKRVFVCPE ASCLHHHPRH ALGDLVGIKK  120
HFRRKHSGNR QWGCARCSKA YAVLSDYKAH LKTCGTRGHC CDCGRVFSRV EAFIEHQDSC  180
TAPATQSPPS PPPPPPPTTF FYFEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16128182357Zinc finger protein JACKDAW
5b3h_F3e-16128182357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630KKKRR
22631KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573251.11e-144protein indeterminate-domain 14-like
SwissprotF4IPE32e-91IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLF2E0G07e-92F2E0G0_HORVV; Broad leaf 1
TrEMBLM0TIP82e-93M0TIP8_MUSAM; Uncharacterized protein
STRINGMLOC_57613.31e-92(Hordeum vulgare)
STRINGGSMUA_Achr7P18610_0014e-94(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-91C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]