PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17643
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HB-other
Protein Properties Length: 136aa    MW: 15609.9 Da    PI: 9.0635
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17643genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.3e-161451256
                HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++e+e+l +++++p+ ++r +L+++lgL+ +qVk+WFqNrR+++k
  PEQU_17643  1 IQEMEALSKECPHPDDKQRLRLSQELGLKPCQVKFWFQNRRTQMK 45
                6899**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000469.9E-14145IPR001356Homeobox domain
CDDcd000865.23E-12148No hitNo description
PROSITE profilePS5007113.896147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-15250IPR009057Homeodomain-like
SMARTSM003892.0E-5251IPR001356Homeobox domain
SuperFamilySSF466895.01E-13247IPR009057Homeodomain-like
PROSITE patternPS0002702245IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
IQEMEALSKE CPHPDDKQRL RLSQELGLKP CQVKFWFQNR RTQMKAQKDR GAENDSLKNE  60
NYRLQAAIHV ICPSCGGPVI LGEMSFDEHH PRIENARLKE DSQNKPRNNV FSSKGKVPPF  120
PSLKKADEKC VLTILQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596799.16e-96homeobox-leucine zipper protein ROC3-like
SwissprotA2ZAI72e-42ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
SwissprotQ336P22e-42ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2I0VZC13e-48A0A2I0VZC1_9ASPA; Homeobox-leucine zipper protein ROC3
STRINGXP_010245210.18e-48(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5628322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.12e-40protodermal factor 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]