PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17665
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 264aa    MW: 30258.7 Da    PI: 10.1637
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17665genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-19133220196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 f+k++++s+v++  +l lp kf+++h   +++ +t++lede+g++ e  +   +k+ +  l++GWk+F+ +++L++gD +vFkl+++++f  ++ +
  PEQU_17665 133 FVKTMVRSHVSSCFWLGLPTKFCKDHL--PHGVMTMVLEDEKGEEHESIY--IGKRTG--LSGGWKSFAVDHNLEDGDALVFKLIKSTRF--KIYI 220
                 89**********************994..34669****************..555544..*************************98887..5444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-22127222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-23128221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-27131222No hitNo description
PfamPF023625.4E-18133220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492133224IPR003340B3 DNA binding domain
SMARTSM010194.8E-25133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEAPINSYED IRRKRVEENH KQLEGLGISR ISKCLLEAAK TEYKLLKNHR SSNVKKLLET  60
TELRRSSRMR NPVPLYRDDV VDNLIRPHGG RSYKSEFIGR EYTGRIPSYE EKVLALKRAE  120
MLQSLLASNQ PSFVKTMVRS HVSSCFWLGL PTKFCKDHLP HGVMTMVLED EKGEEHESIY  180
IGKRTGLSGG WKSFAVDHNL EDGDALVFKL IKSTRFKIYI VKAIGGSSEA NDSNLLSKQV  240
AEHESTELER NVRKRKKSRT RPSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596800.10.0B3 domain-containing protein Os05g0481400-like isoform X1
SwissprotQ5KQI47e-75Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2I0A8F51e-115A0A2I0A8F5_9ASPA; B3 domain-containing protein
STRINGXP_008803014.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]