PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17795
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family BBR-BPC
Protein Properties Length: 339aa    MW: 37444.5 Da    PI: 10.1488
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17795genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind359.56.6e-110833916301
   GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksid 109
                 p++++k+  ++++m+++aerd++i+ernlal+ekkaa+aerdma lqrd+ +aern a++erdn+l+al++ ++s+        +p+g+++ +gtk+ +
  PEQU_17795   8 PQHQMKDGHTMKVMAILAERDNAIQERNLALAEKKAALAERDMAILQRDAVIAERNTAILERDNALAALEYSRESSLngdnsAGCPPGCSAPRGTKHFH 106
                 6679******************************************************************99988777998889************987 PP

   GAGA_bind 110 sl.qqlse.............pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader....... 186
                 ++ +q+++              ql+d+++   re++  ea+pi+ a + + + +k+k++++++k+++++ +kk    +k k+    e  +++       
  PEQU_17795 107 QHlHQHQHqhqhqpqhlqhppAQLSDNPYIhGREMQVAEAYPISAASDGVVKIRKPKRSRKESKAQASNPTKKAS--RKGKRAAGGEDLNKQitiakpl 203
                 641332224678999999998899999998789999999999999999999999998655555555444443333..3333333333322225678899 PP

   GAGA_bind 187 .....................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqga 264
                                      +++e+k +dl+ln v++Dest+P P+CsCtG+l+qCYkWG+GGWqSaCCttt+S+yPLPv++++r+aR+agrKmS++a
  PEQU_17795 204 nqwrgnaigggedlnkqavvtKHHEWKGQDLGLNLVTFDESTMPSPACSCTGKLQQCYKWGSGGWQSACCTTTLSMYPLPVMPNKRHARVAGRKMSGSA 302
                 9*******************9999*************************************************************************** PP

   GAGA_bind 265 fkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 f+klL++LaaeG+dls p+DLkdhWAkHGtn+++ti+
  PEQU_17795 303 FTKLLSRLAAEGHDLSAPLDLKDHWAKHGTNRYITIK 339
                 ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.8E-1322339IPR010409GAGA-binding transcriptional activator
PfamPF062179.2E-964339IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
VGSQWMMPQH QMKDGHTMKV MAILAERDNA IQERNLALAE KKAALAERDM AILQRDAVIA  60
ERNTAILERD NALAALEYSR ESSLNGDNSA GCPPGCSAPR GTKHFHQHLH QHQHQHQHQP  120
QHLQHPPAQL SDNPYIHGRE MQVAEAYPIS AASDGVVKIR KPKRSRKESK AQASNPTKKA  180
SRKGKRAAGG EDLNKQITIA KPLNQWRGNA IGGGEDLNKQ AVVTKHHEWK GQDLGLNLVT  240
FDESTMPSPA CSCTGKLQQC YKWGSGGWQS ACCTTTLSMY PLPVMPNKRH ARVAGRKMSG  300
SAFTKLLSRL AAEGHDLSAP LDLKDHWAKH GTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572822.10.0barley B recombinant-like protein D
RefseqXP_020572823.10.0barley B recombinant-like protein D
RefseqXP_020572824.10.0barley B recombinant-like protein D
RefseqXP_020572825.10.0barley B recombinant-like protein D
RefseqXP_020572826.10.0barley B recombinant-like protein D
RefseqXP_020572827.10.0barley B recombinant-like protein D
SwissprotQ5VSA81e-124BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2I0VK710.0A0A2I0VK71_9ASPA; Barley B recombinant-like protein D
STRINGXP_008779916.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-101basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]