PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17865
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 257aa    MW: 28802.5 Da    PI: 10.2677
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17865genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.57e-302101194
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                 f+k+ tpsdv+k++rlv+pk++ae++         + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk++ L++gD+v F +  g+  + +
  PEQU_17865   2 FDKIVTPSDVGKLNRLVIPKQHAEKYfpldtaA--HDRGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKSLDAGDTVSFGRGmGEsVSHR 98 
                 89*************************999543..458889***********************************************94434445555 PP

                 .EE CS
          B3  92 lvv 94 
                 l++
  PEQU_17865  99 LFI 101
                 555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.85E-24187No hitNo description
Gene3DG3DSA:2.40.330.101.5E-381108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.8032105IPR003340B3 DNA binding domain
PfamPF023622.8E-272106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-282108IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-202107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFDKIVTPSD VGKLNRLVIP KQHAEKYFPL DTAAHDRGLL LNFEDRNGKP WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKSLD AGDTVSFGRG MGESVSHRLF IDWKRRPDPL LNPPNTIRIP  120
RFSYHSSPTS SHPHPYLSLA RSASAPWSAS RLFIPHTPTP PPPSDLFYFR STSAVPGQSS  180
PLPTKPKRVR LFGVNLDQPY DEADKTKTNG FIGLQLSSTV ASQNLCLGTT EPFSAASSSS  240
SAKFSSHHSP PFDFDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-5711077114B3 domain-containing transcription factor NGA1
5os9_B5e-5711077114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577899.10.0B3 domain-containing protein Os03g0120900-like isoform X2
SwissprotQ8LMR92e-69Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2I0WPF21e-111A0A2I0WPF2_9ASPA; B3 domain-containing protein
STRINGORGLA03G0014300.13e-68(Oryza glaberrima)
STRINGOBART03G01650.13e-68(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]