PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_17906

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

YABBY

Protein Properties

Length: 228aa MW: 25592.4 Da PI: 9.2769

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_17906	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	221.4	2.6e-68	19	190	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas.tsvsseklse 103 +e++Cyv+CnfC+t+lavsvP++slfk+v+vrCGhC++llsv+++ +++ hl++ ++ +++++l + ++++s++ +++ + +++ + l + PEQU_17906 19 PTEKLCYVHCNFCDTVLAVSVPYSSLFKTVAVRCGHCSNLLSVSMRGLLLPATSQLHLGHPFQSPVQHNLLEDVQSYQSQNLMDNLPFlSNNLMPPLAK 117 689*************************************99999999999999******999999999999888777766514455666766 PP YABBY 104 nedeevprvppvir......PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ee+p+ ++r PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ih gl PEQU_17906 118 VTEEELPQNSVTNRrkflssSPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHLGL 190 666666655544442333338***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.3E-67	19	190	IPR006780	YABBY protein
SuperFamily	SSF47095	6.02E-8	128	183	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.3E-4	139	182	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
SKMSSTPSPF SLEQISPPPT EKLCYVHCNF CDTVLAVSVP YSSLFKTVAV RCGHCSNLLS 60 VSMRGLLLPA TSQLHLGHPF QSPVQHNLLE DVQSYQSQNL MDNLPFLSNN LMPPLAKVTE 120 EELPQNSVTN RRKFLSSSPE KRQRVPSAYN RFIKDEIQRI KAGNPDITHR EAFSAAAKNW 180 AHFPHIHLGL MPDQAIKKAT VHPPVMLGNQ FFLFSFKDIT SVSFNKSF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592546.1	1e-150	protein YABBY 4-like isoform X1
Swissprot	Q01JG2	2e-72	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-72	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A2I0W7A5	1e-107	A0A2I0W7A5_9ASPA; Axial regulator YABBY 1
STRING	GSMUA_Achr8P11580_001	3e-92	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	2e-64	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]