PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17920
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 210aa    MW: 22710 Da    PI: 10.9983
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17920genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19130164135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  PEQU_17920 130 CTHCGVHKTPQWRAGPQGAKTLCNACGVRYKSGRL 164
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-18124178IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004124160IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14126187No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15128162IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.91E-13129186No hitNo description
PfamPF003203.6E-17130164IPR000679Zinc finger, GATA-type
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSKCYSTGSL PAPSLFSTAT AAGSLSTESL VPIKAKRSKR LRKSRALWSL SGSLKLADSS  60
PSSSLTTFTS CSPTPSSSSS SSSFNSYFHD LSPFTGFTMD GSLALSKAQK LKKRGRKPKN  120
PFFSPAERRC THCGVHKTPQ WRAGPQGAKT LCNACGVRYK SGRLLPEYRP ACSPSFVSNI  180
HSNSHRKVLE MRRKKDEQLV VISAPPVSSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592563.11e-147GATA transcription factor 6-like
TrEMBLA0A2I0VF052e-81A0A2I0VF05_9ASPA; GATA transcription factor 5
STRINGXP_008796881.14e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-40GATA transcription factor 5