PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_17954

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 125aa MW: 14510.6 Da PI: 8.6363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_17954	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.9	5e-11	2	61	30	90
FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++fvC k g+++e k++ + r +ra trtg +++ + +g+w v+k+ + HnH+l+ PEQU_17954 2 TKDFVCGKAGFKKELKDT-ITVRFKRADTRTGSSVMIRYFVDLEGNWSVKKFMESHNHPLV 61 589*********9988.99999*************99**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-8	2	61	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MTKDFVCGKA GFKKELKDTI TVRFKRADTR TGSSVMIRYF VDLEGNWSVK KFMESHNHPL 60 VEDGDNHLLC SSKKMCDISA NILRSMIKSR IRTSDAFKFL ATEVEEVENL DCTKRDAYIS 120 YRERE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573853.1	2e-66	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020581377.1	1e-66	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VPA5	5e-32	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-08	FAR1 family protein