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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_18104 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 219aa MW: 24382.9 Da PI: 7.0194 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 46.5 | 6.7e-15 | 56 | 101 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ +Er+RR+++N+++ Lr+++P+ +K++Ka+i++ A+eYI++Lq
PEQU_18104 56 NIVMERNRRKKLNERLYALRSVVPNI-----TKMDKASIVKDAIEYIQQLQ 101
5679*********************7.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.18E-18 | 49 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 17.041 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.13E-14 | 55 | 105 | No hit | No description |
| Pfam | PF00010 | 2.0E-12 | 56 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.5E-18 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.0E-17 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 219 aa Download sequence Send to blast |
MDDMDADYDH YWDTKLFLDG EELNSWGGLD EHLSSYDSSS PECATSPSSS SAAAKNIVME 60 RNRRKKLNER LYALRSVVPN ITKMDKASIV KDAIEYIQQL QKEEKKLVAE VGEMESCHRS 120 GGKIISSSIS DEIVRKKRKT SPSSPGGRPI DAMELSVCAV GERTLAVSIS CSRKRHAMMK 180 VCEIFESLNV KIITASFTSV SGSLLHTLFI EVINIFLKI |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020582616.1 | 1e-155 | transcription factor bHLH35 | ||||
| Swissprot | Q2HIV9 | 6e-63 | BH035_ARATH; Transcription factor bHLH35 | ||||
| TrEMBL | A0A2I0WP63 | 1e-116 | A0A2I0WP63_9ASPA; Transcription factor bHLH35 | ||||
| STRING | XP_008799483.1 | 8e-84 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1044 | 38 | 133 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57150.2 | 3e-55 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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