PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18124

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 60aa MW: 7021.98 Da PI: 10.8198

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18124	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.7	9.4e-14	2	40	23	57
SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+p+a+++e+++++l +++ ++V++WFqN++a+e++ PEQU_18124 2 RTPNAQQIEKITAELmnhgRIEGKNVFYWFQNHKARERQ 40 89***********************************97 PP
2	Wus_type_Homeobox	78	1.3e-25	1	42	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtPn+++i++itaeL ++G+ie+kNVfyWFQN+kaRerqkq PEQU_18124 1 MRTPNAQQIEKITAELMNHGRIEGKNVFYWFQNHKARERQKQ 42 79**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.086	1	41	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-11	2	40	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.12E-8	2	46	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-5	6	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MRTPNAQQIE KITAELMNHG RIEGKNVFYW FQNHKARERQ KQKRNAHLSP SSPICSDTKA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020582602.1	1e-37	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	5e-21	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2I0XIT7	4e-26	A0A2I0XIT7_9ASPA; WUSCHEL-related homeobox 4
STRING	XP_008444600.1	7e-22	(Cucumis melo)
STRING	XP_008778641.1	4e-22	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12692	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-23	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]