PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18185

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 152aa MW: 17219.8 Da PI: 8.4765

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18185	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.1e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+ +C++ pyf ++p+kfa++hk++Gasnv+k+l ++pe +r d+++slvyeA+ r++dPvyG++g i lq+q+++l++el +lke PEQU_18185 7 PCAACKLLRRRCVLECPFFPYFSPSEPQKFAATHKVYGASNVSKMLMKVPEAQRADTARSLVYEANLRLQDPVYGCMGAIIVLQKQVNELETELRRLKE 105 7*********************************************************************************************99998 PP DUF260 100 e 100 e PEQU_18185 106 E 106 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.745	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
VLNTTTPCAA CKLLRRRCVL ECPFFPYFSP SEPQKFAATH KVYGASNVSK MLMKVPEAQR 60 ADTARSLVYE ANLRLQDPVY GCMGAIIVLQ KQVNELETEL RRLKEELLKN SYSVIPSSTH 120 GSSTEQWPQL PEFPSASSSM FINTEWQNQN MK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	3	109	7	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	3	109	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575343.1	1e-112	LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	2e-53	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2I0VFL7	7e-71	A0A2I0VFL7_9ASPA; LOB domain-containing protein 13
STRING	XP_009369256.1	2e-57	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-50	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]