PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18334

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

G2-like

Protein Properties

Length: 426aa MW: 47371.9 Da PI: 9.1425

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18334	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.4e-32	143	196	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PEQU_18334 143 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 196 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.58E-15	140	196	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-28	141	196	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	143	196	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	144	195	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MELFSAQPDL SLQISPPNSS KPSTRCNSSS AEDTIDFGFW RRPAVATPIL PVKSPSGAGT 60 ISFVDLSLTS PSPSTTTTSR HPLLNESHHQ DLTFLRPIRG IPVYHTSPSF PFPLPHHLHL 120 FDSSRSPSRF LPRFPAKRSM RGPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK 180 DLTLAHVKSH LQMYRTVKTT DKAATSSGQS EPIEISDDNL FDTNNSQGSD HSSVQNFWSA 240 DQNCTNSYGL WSSSPSKGGY YQDKPKESAI GTMSCFENKI HARSLNMISD LNSSYLSENS 300 SKKLNLDFTL GRQGLAFSWV KLEGGGPKFW RKREVLPDCF YAPPATELRH LLTRGLSLLL 360 ARLTAQVSDV VIPPPSPAIK TPFRGVLGLA EFCFERGRCC HFCVSFLHSV CVFEALRRLC 420 LLLEKA

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MELFSAQPDL SLQISPPNSS KPSTRCNSSS AEDTIDFGFW RRPAVATPIL PVKSPSGAGT  60
ISFVDLSLTS PSPSTTTTSR HPLLNESHHQ DLTFLRPIRG IPVYHTSPSF PFPLPHHLHL  120
FDSSRSPSRF LPRFPAKRSM RGPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK  180
DLTLAHVKSH LQMYRTVKTT DKAATSSGQS EPIEISDDNL FDTNNSQGSD HSSVQNFWSA  240
DQNCTNSYGL WSSSPSKGGY YQDKPKESAI GTMSCFENKI HARSLNMISD LNSSYLSENS  300
SKKLNLDFTL GRQGLAFSWV KLEGGGPKFW RKREVLPDCF YAPPATELRH LLTRGLSLLL  360
ARLTAQVSDV VIPPPSPAIK TPFRGVLGLA EFCFERGRCC HFCVSFLHSV CVFEALRRLC  420
LLLEKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	144	198	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	144	198	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	144	198	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	144	198	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	144	198	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020582968.1	0.0	probable transcription factor KAN2
Swissprot	Q9C616	4e-60	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2I0WP90	1e-156	A0A2I0WP90_9ASPA; Putative transcription factor KAN2
STRING	XP_008800121.1	1e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9438	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-45	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]