PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18431
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 239aa    MW: 27182.9 Da    PI: 9.953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18431genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-123884147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + +W  eEde l+ +++ +G g+W+++ +  g+ R + +c++rw++ 
       PEQU_18431 38 KRPWRSEEDEALLSYIESHGLGNWNLVGKNSGLSRDGRSCRLRWLNQ 84
                     569*****************************************996 PP
2Myb_DNA-binding29.51.7e-0992133144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++++++E  ++   ++ +G+  W++Ia+ ++ gRt++ +k++ 
       PEQU_18431  92 KLPFSKQEKYIIFSIHATFGNS-WSRIAKALP-GRTDNAIKNFV 133
                      689*****************99.*********.********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9013389IPR017930Myb domain
SuperFamilySSF466895.01E-2537131IPR009057Homeodomain-like
SMARTSM007176.6E-103787IPR001005SANT/Myb domain
PfamPF002492.1E-103884IPR001005SANT/Myb domain
CDDcd001679.35E-94083No hitNo description
Gene3DG3DSA:1.10.10.602.5E-174092IPR009057Homeodomain-like
PROSITE profilePS5129411.39590141IPR017930Myb domain
SMARTSM007178.7E-991139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-1693140IPR009057Homeodomain-like
PfamPF002495.3E-893132IPR001005SANT/Myb domain
CDDcd001672.82E-694132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKGTFEKQRV FQPHFIGGNA VVQGVTELRL METRKREKRP WRSEEDEALL SYIESHGLGN  60
WNLVGKNSGL SRDGRSCRLR WLNQLQPGLK KKLPFSKQEK YIIFSIHATF GNSWSRIAKA  120
LPGRTDNAIK NFVNGHIKKC LKTGTIPIYP PQINIKYSTG SSEFSHIVSS DIQNLVVQEQ  180
VDLPSIQNTE EDAGDRLDSY LQTLQSSIEL VPQTQLVPPL QEFNTSFNSV VIQRLFHGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23381437110B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583519.11e-154transcription factor MYB101-like
RefseqXP_020599915.11e-154transcription factor MYB101-like
TrEMBLA0A2I0WL495e-80A0A2I0WL49_9ASPA; Transcription factor GAMYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-38myb domain protein 33