PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18501

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HD-ZIP

Protein Properties

Length: 167aa MW: 19142.7 Da PI: 9.4674

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18501	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	36	89	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F++n++++ +++e LA+kl+L rqV vWFqNrRa+ k PEQU_18501 36 KKLRLSKEQSRMLEESFRQNHTLNPKQKEALASKLRLRPRQVEVWFQNRRARTK 89 67789***********************************************98 PP
2	HD-ZIP_I/II	125.3	2.8e-40	36	123	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rlskeq+++LEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr + PEQU_18501 36 KKLRLSKEQSRMLEESFRQNHTLNPKQKEALASKLRLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 123 9*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-20	10	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.19E-20	23	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	31	91	IPR001356	Homeobox domain
SMART	SM00389	8.0E-16	33	95	IPR001356	Homeobox domain
CDD	cd00086	4.65E-13	34	92	No hit	No description
Pfam	PF00046	1.8E-16	36	89	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.8E-10	91	124	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	6.4E-23	91	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MNRPASGGEE EFPASGEEGE EEDGGDGDGD CGHRPKKLRL SKEQSRMLEE SFRQNHTLNP 60 KQKEALASKL RLRPRQVEVW FQNRRARTKL KQTEMECEYL KRCFGSLTEE NRRLQREVEE 120 LRALRVAPPT VLSPLTRQPM PASALTMCPR CQRLTMATHR RPPSTAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571796.1	1e-119	homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	2e-85	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	2e-85	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2I0VFA6	9e-99	A0A2I0VFA6_9ASPA; Homeobox-leucine zipper protein HOX3
STRING	LPERR01G20820.1	9e-87	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-59	homeobox-leucine zipper protein 17