PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18592

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 443aa MW: 49077.7 Da PI: 6.5542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18592	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276.3	9.5e-85	171	410	1	253
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+++L++cAea+++++ +la+++++++ l s++ +m+++a +f+eALa+r+++ ++p+++++ +s+ + + f+e++P+lkf+h+taN PEQU_18592 171 LIHALIACAEAIQEENYKLADTIMKQIPFLTSSQHGAMRKVAVFFAEALARRIYH--------IHPNQDHSLDSAFSDILQMHFYETCPYLKFAHFTAN 261 689*************************************************9........77788876666666666666************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaIlea++g++rvH+iDf+i+qG+QWpaL+qaLa Rp+gpps+R+Tg+++p+s+++e+l+++g +La++A++++v+fef+ lva++l+dle+ +L+v+p PEQU_18592 262 QAILEAFAGHRRVHVIDFGIKQGMQWPALMQALALRPGGPPSFRLTGIAPPQSDDSESLQQLGVKLAQLAKTIHVDFEFRGLVANSLADLEPYMLDVEP 360 ********************************************************************************************986 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 E++a+n+v++lh l++ ++++++ vL+++++l+P+++++veqea+hn++++ PEQU_18592 361 -ETIAINSVFELHGLHALPGAITK----VLNTIRQLRPRILTMVEQEANHNANRW 410 .9*********988888877....*********************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	4.4E-30	2	72	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	9.3E-26	2	78	No hit	No description
PROSITE profile	PS50985	44.291	145	443	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-82	171	410	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDELLASLGY KVRPSDMADL AQKLELLDEA MGNSSMQEDS LLSHLASDAV HYNPSNLWSW 60 VENMLSELNP PSSPSVTFPN PSAQETSPIG VSSWLGYPYP AESAVGIQSD CGSEPHVRSN 120 DWKRMRTSYS FSSSSSSSAA SSGGLIGASE VPPSALPMVM AHSDHEVGIR LIHALIACAE 180 AIQEENYKLA DTIMKQIPFL TSSQHGAMRK VAVFFAEALA RRIYHIHPNQ DHSLDSAFSD 240 ILQMHFYETC PYLKFAHFTA NQAILEAFAG HRRVHVIDFG IKQGMQWPAL MQALALRPGG 300 PPSFRLTGIA PPQSDDSESL QQLGVKLAQL AKTIHVDFEF RGLVANSLAD LEPYMLDVEP 360 ETIAINSVFE LHGLHALPGA ITKVLNTIRQ LRPRILTMVE QEANHNANRW QYENDSIRRG 420 EKKILYNIHR RKKSSSVAAR LQR

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDELLASLGY KVRPSDMADL AQKLELLDEA MGNSSMQEDS LLSHLASDAV HYNPSNLWSW  60
VENMLSELNP PSSPSVTFPN PSAQETSPIG VSSWLGYPYP AESAVGIQSD CGSEPHVRSN  120
DWKRMRTSYS FSSSSSSSAA SSGGLIGASE VPPSALPMVM AHSDHEVGIR LIHALIACAE  180
AIQEENYKLA DTIMKQIPFL TSSQHGAMRK VAVFFAEALA RRIYHIHPNQ DHSLDSAFSD  240
ILQMHFYETC PYLKFAHFTA NQAILEAFAG HRRVHVIDFG IKQGMQWPAL MQALALRPGG  300
PPSFRLTGIA PPQSDDSESL QQLGVKLAQL AKTIHVDFEF RGLVANSLAD LEPYMLDVEP  360
ETIAINSVFE LHGLHALPGA ITKVLNTIRQ LRPRILTMVE QEANHNANRW QYENDSIRRG  420
EKKILYNIHR RKKSSSVAAR LQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-35	178	405	26	255	Protein SCARECROW
5b3h_A	3e-35	178	405	25	254	Protein SCARECROW
5b3h_D	3e-35	178	405	25	254	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020594013.1	0.0	LOW QUALITY PROTEIN: DELLA protein SLR1-like
Swissprot	Q9ST48	1e-151	DWRF8_MAIZE; DELLA protein DWARF8
TrEMBL	A0A2I0W1E0	0.0	A0A2I0W1E0_9ASPA; DELLA protein GAI1
STRING	XP_008782281.1	1e-164	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-138	GRAS family protein

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895]