PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18939

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 156aa MW: 17589.7 Da PI: 6.7907

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18939	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.2	1.2e-32	2	88	14	100
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C++apyf e+p+kf nvhk+FGasnv kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+++++l++el+++++e PEQU_18939 2 PSCIFAPYFHPEEPQKFINVHKVFGASNVAKLLNDLLPSQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRHIQRLQKELDATNAE 88 78*******************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.204	1	89	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-32	2	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MPSCIFAPYF HPEEPQKFIN VHKVFGASNV AKLLNDLLPS QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQRHIQRLQK ELDATNAELL RYAYAEQRSP NVSTMISPSL RVHYPHPPLP 120 AHGLWPSFVS YHHPHSQNDT CSNSSSGELN QRGEWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-51	1	96	23	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-51	1	96	23	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588472.1	1e-114	LOB domain-containing protein 25-like
Refseq	XP_020594390.1	1e-114	LOB domain-containing protein 25-like
Refseq	XP_020596227.1	1e-114	LOB domain-containing protein 25-like
Swissprot	Q9FML4	4e-49	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2I0X551	7e-77	A0A2I0X551_9ASPA; Protein LATERAL ORGAN BOUNDARIES
STRING	Gorai.012G063800.1	9e-54	(Gossypium raimondii)
STRING	XP_008795982.1	9e-54	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-51	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]