PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18947
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 912aa    MW: 100440 Da    PI: 7.71
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18947genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-19351450198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   ++++e++ l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv++
  PEQU_18947 351 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGIPLKIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGKLVMG 447
                 99**************************666778899***************9989999999***9.********************987.77777777 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  PEQU_18947 448 FRK 450
                 776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-30343457IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-20348451IPR015300DNA-binding pseudobarrel domain
CDDcd100179.33E-24349450No hitNo description
SMARTSM010191.9E-21351451IPR003340B3 DNA binding domain
PfamPF023623.7E-16351450IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194351452IPR003340B3 DNA binding domain
PROSITE profilePS5105014.328615665IPR011124Zinc finger, CW-type
PfamPF074966.6E-12620662IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MSTKRCMNGG CGATAAAGVW RKGWLLRSGG FATLCDKCGL AYERLVFCES FHQKESGWRE  60
CAFCGKRLHC GCIASKSMLD LLDGGGVQCL MCLKNYGNSS VTESVQDLLP PPSQRVLALS  120
AKCSVDEKTN EFDSSPINKS AELQIISSNR IITDDATMKC NLMHLGRNMD VNGYNTMLLT  180
PRENTNGCFN RVKQEQISLH RGDLGRSDCM GKGHKSDSKY DLKDYLSNPF ADARLSMSLG  240
GANTSNILEA CSNAGTREIA MSHQAIIDDG RDQGKILTTF QNVQRARHVL PKLPKLALDA  300
SKEMVPQMRV ARPPAETRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA  360
GRIGRLVLPK ACAEAYFPPI SQPEGIPLKI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP  420
CIQSLQLQAG DTVTFSRIDP EGKLVMGFRK ATNTAPLQEA QISALATGVL GSETFYSGLN  480
MNLLVSGYSG LLQSMKGTRA PHLSHFSENF ICADEEVCCV KTDKHGSWAN EGLLQSSLTP  540
EKRRSRNIGS KSKRLLMNND DAMELKLSWE EAQDLLRPPP TVQPSIVIIE DQEFEEYEEP  600
PVLGKRTFFT ARASSGGQDQ WIQCDDCFKW RRIPVDFLPP SKWTCVENTW DSKRSSCSAP  660
DELTSSEVQD LLRQHAELKR PRISSSKQSP SEAESAGLDA LAAAVVLGEV GNQASPSTAT  720
TTRHPRHRPG CTCIVCIQPP SGKGPKHSPT CTCNVCMTVK RRFKTLMMRK KKRQSEREEA  780
EVNKKLSWGS REELEGTSSS NVKEREADLM ETLEISKGHI DLNCQPQRDA EQRAATAGAS  840
SSSPQMSMMS LLQVAGLPLE NYLKQNRLVS LTPSEQQVSS GSATVPPAAV ESESCGDDDL  900
CGSEKVRNDA AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-693294582131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1759770KRRFKTLMMRKK
2759772KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577059.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2I0BGE90.0A0A2I0BGE9_9ASPA; B3 domain-containing protein
STRINGXP_010252057.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]