PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18967

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 212aa MW: 23927.1 Da PI: 10.0612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18967	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.5	3e-41	9	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF Pt+eel+++yL++k+++ + ++e+vi+ ++++++ePw+Lp+ ++ +++++w+fF++++++++ g r++r+t+sgyWk+tg++ +++s+ PEQU_18967 9 LPGFRFYPTEEELLSFYLRNKLNNLRGDMERVIPVLNVFSLEPWQLPElsgepCL-QDKEQWFFFCPQQERESAGGRPRRITASGYWKTTGSSVAIYSS 106 59*************************99************64565433.3677*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+kkt++fy+gr +++kt+W m++y l PEQU_18967 107 TQRRLGMKKTMAFYNGRPLRSQKTKWKMNQYLL 139 *****************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-44	4	169	IPR003441	NAC domain
PROSITE profile	PS51005	43.705	8	171	IPR003441	NAC domain
Pfam	PF02365	1.8E-22	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
EALISMNSLP GFRFYPTEEE LLSFYLRNKL NNLRGDMERV IPVLNVFSLE PWQLPELSGE 60 PCLQDKEQWF FFCPQQERES AGGRPRRITA SGYWKTTGSS VAIYSSTQRR LGMKKTMAFY 120 NGRPLRSQKT KWKMNQYLLF DDRPTTTTST VVPGETPKLR AEFSLCRLYT GSGSLRSFDR 180 RPAAAGEEAS TSEVRLSEGG ASSGSGKKPR VG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	1	174	10	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	1	174	10	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	1	174	10	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	1	174	10	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	1	174	13	171	NAC domain-containing protein 19
3swm_B	1e-26	1	174	13	171	NAC domain-containing protein 19
3swm_C	1e-26	1	174	13	171	NAC domain-containing protein 19
3swm_D	1e-26	1	174	13	171	NAC domain-containing protein 19
3swp_A	1e-26	1	174	13	171	NAC domain-containing protein 19
3swp_B	1e-26	1	174	13	171	NAC domain-containing protein 19
3swp_C	1e-26	1	174	13	171	NAC domain-containing protein 19
3swp_D	1e-26	1	174	13	171	NAC domain-containing protein 19
4dul_A	1e-26	1	174	10	168	NAC domain-containing protein 19
4dul_B	1e-26	1	174	10	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577064.1	1e-151	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I0WT46	1e-104	A0A2I0WT46_9ASPA; NAC domain-containing protein 90
STRING	XP_008794217.1	3e-77	(Phoenix dactylifera)
STRING	XP_008806117.1	3e-77	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-64	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]