PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19000

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

CPP

Protein Properties

Length: 135aa MW: 14890.2 Da PI: 8.623

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19000	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.3	2.3e-16	8	47	3	42
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +k+C+Ck+skClk+YC+Cfaag +C+++C C++C+N++e+ PEQU_19000 8 QKRCSCKRSKCLKLYCDCFAAGMFCNKSCACQGCSNNSEN 47 79**********************************9985 PP
2	TCR	54.3	2.7e-17	92	130	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++ag+ Cs C+Ce+CkN PEQU_19000 92 RHKRGCNCKKSKCLKKYCECYQAGVGCSLGCRCEGCKNV 130 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.5E-15	6	47	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.284	7	132	IPR005172	CRC domain
Pfam	PF03638	7.1E-13	8	44	IPR005172	CRC domain
SMART	SM01114	4.5E-17	92	133	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-13	94	129	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
KNPEIEGQKR CSCKRSKCLK LYCDCFAAGM FCNKSCACQG CSNNSENEEM VSSTRQLIEA 60 RNPLAFAPKV VHANGDLKES ADNKHITPPS ARHKRGCNCK KSKCLKKYCE CYQAGVGCSL 120 GCRCEGCKNV YGMKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-20	8	130	11	121	Protein lin-54 homolog
5fd3_B	2e-20	8	130	11	121	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590388.1	3e-91	uncharacterized protein LOC110031506 isoform X1
Swissprot	F4JIF5	6e-52	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2I0WBE3	2e-83	A0A2I0WBE3_9ASPA; Protein tesmin/TSO1-like CXC 2
STRING	XP_008785101.1	2e-58	(Phoenix dactylifera)
STRING	XP_008792142.1	2e-59	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-41	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]