PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19038

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 188aa MW: 20867 Da PI: 4.9006

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19038	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.3	2.9e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+ ++ p++q +++ +v+k+FG++ ++ +l+++pee+r+++++sl++e++ r +Pv+Gavg+i++ +++l+ +++e+ PEQU_19038 2 SCNGCRVLRKGCSESCILRSCLqwiesPEAQGHATVFVAKFFGRAGLMAFLSSVPEENRPALFQSLLFESCGRSINPVSGAVGLIWTRKWNLCLEAVET 100 6*********************************************************************************************99998 PP DUF260 95 all 97 +l+ PEQU_19038 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.23	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIESPE AQGHATVFVA KFFGRAGLMA FLSSVPEENR 60 PALFQSLLFE SCGRSINPVS GAVGLIWTRK WNLCLEAVET VLRGGTIRPI SELPEVRAAD 120 DEEVYGMWPK SPLIGNLLSH VKCDLELYLR LPVTEEKEMP GTPSMNSSTT GDEDNCIDRE 180 QRVLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593604.1	1e-137	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	3e-65	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2I0V7T9	1e-100	A0A2I0V7T9_9ASPA; LOB domain-containing protein 39
STRING	XP_008800648.1	1e-70	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-67	LOB domain-containing protein 39