PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 383aa    MW: 43184.8 Da    PI: 5.8914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19042genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS201.64.7e-6273792372
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++ A a++s+d +l q+l + + +l+ pdg++ q la+ f++AL  r +      +   +p+  +     ++  +l  f +++P++ f++ +aN+
  PEQU_19042   7 EQLLIHLAGAIDSHDSALSQQLFWIMYNLVPPDGNSKQYLASSFLRALLLRSNP----FFTHPQPTCLT---PLSH-ISLASFIDLTPWHCFGFSVANS 97 
                 799*********************************************999888....22222222222...2333.34457***************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.......vakr 185
                  I++a+++   +Hi+D++ ++ +Q p+L+++L+  Rp+  p lR+T v+ p++        ++ ++++g+ L kfA++ ++ +efn++         + 
  PEQU_19042  98 IIVDATDSIPVLHIVDLSTTH-MQIPTLIDSLSsHRPDYHPLLRLTIVVLPSPPipisslLATPIHHLGSHLIKFAHSRNLVMEFNTIlstptdgFLSF 195
                 ******************987.9*********97899*************999899988889999**********************966665555556 PP

        GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eeri 283
                 ++ l+l++L +   E+l++n+++ lh+++de++ ++s+r+++L++++  +P +v++v+++ad  +   ++++  a++y++  fd+l++ l+++  ee++
  PEQU_19042 196 IDHLNLQQL-LTDSETLVINCHMLLHYTPDETLIMPSPRSSFLEALRAHEPAIVIIVNEDADFIDVVVVNKLRVAFNYFWIPFDALDTFLSSDVtEEKM 293
                 677788888.6779****************************************************************************999878888 PP

        GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                   E++ ++++i+nv+  eg er+er e+ +k  er++ a Fk + +++ka +++k++l k++ +g+ +++++++lvl+Wk+   v++Sa
  PEQU_19042 294 RFEEM-MNWKIKNVIVEEGLERVERLENRSKRVERMRGA-FKGLGFGDKALMEVKSVLDKHS-KGWGIKSSEEELVLTWKGYDDVFASA 379
                 88888.*************************99999876.*********************9.99***************987777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.0231362IPR005202Transcription factor GRAS
PfamPF035141.6E-597379IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
SNTSCMEQLL IHLAGAIDSH DSALSQQLFW IMYNLVPPDG NSKQYLASSF LRALLLRSNP  60
FFTHPQPTCL TPLSHISLAS FIDLTPWHCF GFSVANSIIV DATDSIPVLH IVDLSTTHMQ  120
IPTLIDSLSS HRPDYHPLLR LTIVVLPSPP IPISSLLATP IHHLGSHLIK FAHSRNLVME  180
FNTILSTPTD GFLSFIDHLN LQQLLTDSET LVINCHMLLH YTPDETLIMP SPRSSFLEAL  240
RAHEPAIVII VNEDADFIDV VVVNKLRVAF NYFWIPFDAL DTFLSSDVTE EKMRFEEMMN  300
WKIKNVIVEE GLERVERLEN RSKRVERMRG AFKGLGFGDK ALMEVKSVLD KHSKGWGIKS  360
SEEELVLTWK GYDDVFASAC VPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-35138382475Protein SHORT-ROOT
5b3h_B4e-35138328421Protein SHORT-ROOT
5b3h_E4e-35138328421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020687676.11e-140scarecrow-like protein 32
TrEMBLA0A2I0WPV21e-139A0A2I0WPV2_9ASPA; Scarecrow-like protein 32
STRINGGSMUA_Achr6P07790_0011e-125(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.14e-93GRAS family protein